PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474598.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 443aa    MW: 49482.3 Da    PI: 8.552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-057395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  XP_016474598.1 73 FICEVCNKGFQREQNLQLHRRGH 95
                    89*******************88 PP

2zf-C2H210.80.0016151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC  C+k +  +s+ k H +t+
  XP_016474598.1 151 WKCDRCSKKYAVQSDWKAHSKTC 173
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-77295No hitNo description
Gene3DG3DSA:3.30.160.604.7E-67295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527395IPR015880Zinc finger, C2H2-like
PfamPF121712.1E-57395IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM0035588116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-5139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-7146171No hitNo description
SMARTSM00355250151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSNISSGNSS TAGAEEEYEE QDQQQTSNVL LPSSVHQEQD LPNKKRRKLP GNPDPSAEVI  60
ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTSSDEI RKRRVYICPE  120
PTCIHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDRCSKKY AVQSDWKAHS KTCGTKEYKC  180
DCGTIFSRRD SFITHRAFCD ALTEENNKVN QSLASTTGPS HTPVSEVMPT SMLNLSEIRN  240
PNMKIPLKPS PRELNIQTPT GPLLNMAGSM FTSPRNLSSS SFSGFQLSTN SSNMSSSATA  300
LLQQAAQMGA TVSSSMNSPI MVQKGYPSLF QSDHNQTQIG SSVHGFFGSM LQNGTQETLI  360
SELLNSNSTA GDNQKTSRMQ NEGWYNGLFN ETKINGESGN DSLTLDFLGI GGMRQRNSHE  420
MHQQQQQEMS FEQQKEMSSM WDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14347KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784070.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_016474598.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-110IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A0V0I7781e-178A0A0V0I778_SOLCH; Putative zinc finger protein JACKDAW-like
STRINGSolyc01g099340.2.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-105C2H2-like zinc finger protein